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Data Sources
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Nucleosome Data |
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Experiment |
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Description |
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Source |
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Normal [MNase-seq] |
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Monococcal nuclease digestion follwed by high throughput sequencing data for nucleosome positions of yeast cells grown to mid-log phase in Yeast Extract Peptone Dextrose (YPD) media under normal growth conditions (30°C). |
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Shivaswamy et al, (2008) |
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Heat-shock [MNase-seq] |
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Monococcal nuclease digestion followed by microarray analysis data for nucleosome positions of yeast cells grown to mid-log phase in Yeast Extract Peptone Dextrose (YPD) media under normal growth conditions (30°C). |
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Shivaswamy et al, (2008) |
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Normal [MNase-microarray] |
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Monococcal nuclease digestion followed by microarray analysis data for nucleosome positions of yeast cells grown to mid-log phase in Yeast Extract Peptone Dextrose (YPD) media under normal growth conditions (30°C). |
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Lee et al, (2007) |
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Transcription Factor Binding Site Data Harbison et al. (2004) |
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Conservation |
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Criteria |
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High |
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Sites conserved in S. cerevisiae and at least two other yeast species |
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Medium |
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Sites conserved in S. cerevisiae and at least one other yeast species |
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None |
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No site conservation between yeast species |
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Binding |
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Criteria |
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High |
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Microarray Error Model p<0.001 |
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Medium |
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Microarray Error Model p<0.005 |
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None |
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No binding required |
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| Updated: 10:46 AM, 8 Mar 2009 |
© 2008
Robert Morris, Timothy Ryan O'Connor, and John J. Wyrick . All rights reserved |
Contact: John Wyrick |
| 675 Fulmer Hall | |
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