Overview

The Ceres analysis tool provides a powerful and flexible data-mining interface, and tools to graphically display TF site distributions and biases in selected promoter sequences. The analysis tool can select promoters/genes using a combination of user-inputed accessions, selected TF sites and GO terms, and TF site chromatin environments. For simple queries, however, it is faster to use the data mining tool rather than the analysis tool. For the purpose of this tutorial, we will use the analysis to select all genes that are classified in the 'structural constituent of ribosome', 'mitochondrial ribosome', and 'cytosolic ribosome' GO terms, and contain a Rap1 TF binding site in a nucleosome free region in the target promoters. We will then use the histogram tool to plot the distribution of Rap1-like sites for the selected genes, and analyze the chromatin environment of selected binding sites.

To continue with the analysis tutorial, click the 'Next' link below.

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Tutorials

Visualization | Chromatin Viewer | Gene Set Analysis | Data Mining | Analysis Suite

Updated: 10:46 AM, 8 Mar 2009	© 2008 Robert Morris, Timothy Ryan O'Connor, and John J. Wyrick . All rights reserved	Contact: John Wyrick
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