Overview

The Gene Set Analysis tool enables users to analyze complex gene sets for common or enriched transcription factor (TF) binding sites or Gene functions. The user can input a list of any number of yeast gene names or accessions to analyze using this tool. These lists can be derived from, for example, gene expression profiling experiments or functional pathways or gene categories. The user can also specify the P-value cutoffs used to identify significantly enriched TF binding sites or Gene ontology (GO) functional categories. Importantly, the user can also analyze nucleosome trends or binding site nucleosome environments that are associated with the selected gene set.

To continue with the Gene Set Analysis tutorial, click the 'Next' link below.

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Tutorials

Visualization | Chromatin Viewer | Gene Set Analysis | Data Mining | Analysis Suite

Updated: 10:46 AM, 8 Mar 2009	© 2008 Robert Morris, Timothy Ryan O'Connor, and John J. Wyrick . All rights reserved	Contact: John Wyrick
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